Index _ | A | B | C | D | F | G | H | I | M | N | R | S | T | V _ __init__() (iggytop.adapters.base_adapter.BaseAdapter method) (iggytop.adapters.cedar_adapter.CEDARAdapter method) (iggytop.adapters.iedb_adapter.IEDBAdapter method) (iggytop.adapters.mcpas_adapter.MCPASAdapter method) (iggytop.adapters.neotcr_adapter.NEOTCRAdapter method) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter method) (iggytop.adapters.trait_adapter.TRAITAdapter method) (iggytop.adapters.vdjdb_adapter.VDJDBAdapter method) _abc_impl (iggytop.adapters.base_adapter.BaseAdapter attribute) (iggytop.adapters.cedar_adapter.CEDARAdapter attribute) (iggytop.adapters.iedb_adapter.IEDBAdapter attribute) (iggytop.adapters.mcpas_adapter.MCPASAdapter attribute) (iggytop.adapters.neotcr_adapter.NEOTCRAdapter attribute) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter attribute) (iggytop.adapters.trait_adapter.TRAITAdapter attribute) (iggytop.adapters.vdjdb_adapter.VDJDBAdapter attribute) _generate_edges_from_table() (iggytop.adapters.base_adapter.BaseAdapter method) _generate_nodes_from_table() (iggytop.adapters.base_adapter.BaseAdapter method) _get_epitope_data() (in module iggytop.adapters.utils) _get_reference_data() (in module iggytop.adapters.utils) _is_ig_locus() (in module iggytop.adapters.utils) _process_cdr3_sequence() (in module iggytop.adapters.utils) _process_cdr3_with_j_gene() (in module iggytop.adapters.utils) _process_epitope_sequence() (in module iggytop.adapters.utils) _process_gene() (in module iggytop.adapters.utils) _process_mhc() (in module iggytop.adapters.utils) _process_single_chain() (iggytop.adapters.vdjdb_adapter.VDJDBAdapter method) _set_up_config() (in module iggytop.adapters.utils) _set_up_schema() (in module iggytop.adapters.utils) _transform_paired_data_efficient() (iggytop.adapters.vdjdb_adapter.VDJDBAdapter method) A aggregate_unique_joined() (in module iggytop.adapters.utils) airr_cells (iggytop.adapters.base_adapter.BaseAdapter property) available_receptors (iggytop.adapters.base_adapter.BaseAdapter attribute) (iggytop.adapters.cedar_adapter.CEDARAdapter attribute) (iggytop.adapters.iedb_adapter.IEDBAdapter attribute) (iggytop.adapters.mcpas_adapter.MCPASAdapter attribute) (iggytop.adapters.neotcr_adapter.NEOTCRAdapter attribute) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter attribute) (iggytop.adapters.trait_adapter.TRAITAdapter attribute) (iggytop.adapters.vdjdb_adapter.VDJDBAdapter attribute) B BaseAdapter (class in iggytop.adapters.base_adapter) BCR_FNAME (iggytop.adapters.cedar_adapter.CEDARAdapter attribute) (iggytop.adapters.iedb_adapter.IEDBAdapter attribute) C cache_dir (iggytop.adapters.base_adapter.BaseAdapter property) CEDARAdapter (class in iggytop.adapters.cedar_adapter) create_anndata() (iggytop.adapters.base_adapter.BaseAdapter method) create_knowledge_graph() (in module iggytop.io.create_knowledge_graph) D DB_DIR (iggytop.adapters.cedar_adapter.CEDARAdapter attribute) (iggytop.adapters.iedb_adapter.IEDBAdapter attribute) (iggytop.adapters.mcpas_adapter.MCPASAdapter attribute) (iggytop.adapters.neotcr_adapter.NEOTCRAdapter attribute) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter attribute) (iggytop.adapters.trait_adapter.TRAITAdapter attribute) (iggytop.adapters.vdjdb_adapter.VDJDBAdapter attribute) DB_FNAME (iggytop.adapters.vdjdb_adapter.VDJDBAdapter attribute) DB_NAME (iggytop.adapters.base_adapter.BaseAdapter attribute) db_name (iggytop.adapters.base_adapter.BaseAdapter property) DB_NAME (iggytop.adapters.cedar_adapter.CEDARAdapter attribute) (iggytop.adapters.iedb_adapter.IEDBAdapter attribute) (iggytop.adapters.mcpas_adapter.MCPASAdapter attribute) (iggytop.adapters.neotcr_adapter.NEOTCRAdapter attribute) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter attribute) (iggytop.adapters.trait_adapter.TRAITAdapter attribute) (iggytop.adapters.vdjdb_adapter.VDJDBAdapter attribute) DB_URL (iggytop.adapters.cedar_adapter.CEDARAdapter attribute) (iggytop.adapters.iedb_adapter.IEDBAdapter attribute) (iggytop.adapters.mcpas_adapter.MCPASAdapter attribute) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter attribute) (iggytop.adapters.trait_adapter.TRAITAdapter attribute) deduplicate_and_aggregate() (in module iggytop.adapters.utils) F FILE_NAME (iggytop.adapters.neotcr_adapter.NEOTCRAdapter attribute) G get_edges() (iggytop.adapters.base_adapter.BaseAdapter method) (iggytop.adapters.cedar_adapter.CEDARAdapter method) (iggytop.adapters.iedb_adapter.IEDBAdapter method) (iggytop.adapters.mcpas_adapter.MCPASAdapter method) (iggytop.adapters.neotcr_adapter.NEOTCRAdapter method) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter method) (iggytop.adapters.trait_adapter.TRAITAdapter method) (iggytop.adapters.vdjdb_adapter.VDJDBAdapter method) get_file_checksum() (in module iggytop.adapters.utils) get_iedb_ids_batch() (in module iggytop.adapters.utils) get_latest_release() (iggytop.adapters.base_adapter.BaseAdapter method) (iggytop.adapters.cedar_adapter.CEDARAdapter method) (iggytop.adapters.iedb_adapter.IEDBAdapter method) (iggytop.adapters.mcpas_adapter.MCPASAdapter method) (iggytop.adapters.neotcr_adapter.NEOTCRAdapter method) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter method) (iggytop.adapters.trait_adapter.TRAITAdapter method) (iggytop.adapters.vdjdb_adapter.VDJDBAdapter method) get_mhc_class() (in module iggytop.adapters.utils) get_nodes() (iggytop.adapters.base_adapter.BaseAdapter method) (iggytop.adapters.cedar_adapter.CEDARAdapter method) (iggytop.adapters.iedb_adapter.IEDBAdapter method) (iggytop.adapters.mcpas_adapter.MCPASAdapter method) (iggytop.adapters.neotcr_adapter.NEOTCRAdapter method) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter method) (iggytop.adapters.trait_adapter.TRAITAdapter method) (iggytop.adapters.vdjdb_adapter.VDJDBAdapter method) get_pmids_batch() (in module iggytop.adapters.utils) get_previous_release_metadata() (in module iggytop.adapters.utils) get_tissue_source() (in module iggytop.adapters.utils) H harmonize_sequences() (in module iggytop.adapters.utils) I IEDBAdapter (class in iggytop.adapters.iedb_adapter) iggytop module iggytop.adapters module iggytop.adapters.mapping_utils module iggytop.adapters.utils module iggytop.io module iggytop.io.create_knowledge_graph module M map_antigen_names() (in module iggytop.adapters.mapping_utils) map_species_terms() (in module iggytop.adapters.mapping_utils) MCPASAdapter (class in iggytop.adapters.mcpas_adapter) metadata (iggytop.adapters.base_adapter.BaseAdapter property) module iggytop iggytop.adapters iggytop.adapters.mapping_utils iggytop.adapters.utils iggytop.io iggytop.io.create_knowledge_graph N NEOTCRAdapter (class in iggytop.adapters.neotcr_adapter) normalize_table_strings() (in module iggytop.adapters.utils) R RAW_URL (iggytop.adapters.neotcr_adapter.NEOTCRAdapter attribute) read_table() (iggytop.adapters.base_adapter.BaseAdapter method) (iggytop.adapters.cedar_adapter.CEDARAdapter method) (iggytop.adapters.iedb_adapter.IEDBAdapter method) (iggytop.adapters.mcpas_adapter.MCPASAdapter method) (iggytop.adapters.neotcr_adapter.NEOTCRAdapter method) (iggytop.adapters.tcr3d_adapter.TCR3DAdapter method) (iggytop.adapters.trait_adapter.TRAITAdapter method) (iggytop.adapters.vdjdb_adapter.VDJDBAdapter method) receptors (iggytop.adapters.base_adapter.BaseAdapter property) REPO_NAME (iggytop.adapters.vdjdb_adapter.VDJDBAdapter attribute) S save_airr_cells_csv() (in module iggytop.adapters.utils) save_airr_cells_json() (in module iggytop.adapters.utils) set_metadata() (iggytop.adapters.base_adapter.BaseAdapter method) T table (iggytop.adapters.base_adapter.BaseAdapter property) TCR3DAdapter (class in iggytop.adapters.tcr3d_adapter) TCR_FNAME (iggytop.adapters.cedar_adapter.CEDARAdapter attribute) (iggytop.adapters.iedb_adapter.IEDBAdapter attribute) TRAITAdapter (class in iggytop.adapters.trait_adapter) V VDJDBAdapter (class in iggytop.adapters.vdjdb_adapter)